If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ), 'gf_id' => 'HOM05D000731', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000731' ), 'data_identifier' => 'HOM05D000731', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000731', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06220' => 'bna', 'A02p24100' => 'bna', 'A02p28390' => 'bna', 'A03p32210' => 'bna', 'A04p29170' => 'bna', 'A05p15740' => 'bna', 'A06p47220' => 'bna', 'A09p00520' => 'bna', 'Aa31LG1G14310' => 'aar', 'Aa31LG4G15930' => 'aar', 'Aa31LG5G23650' => 'aar', 'Aa31LG5G570' => 'aar', 'Aa31LG5G6830' => 'aar', 'Aa31LG9G8760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4586' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1031' => 'aag', 'Actinidia01114' => 'ach', 'Actinidia01115' => 'ach', 'Actinidia01116' => 'ach', 'Actinidia05345' => 'ach', 'Actinidia07189' => 'ach', 'Actinidia10038' => 'ach', 'Actinidia20896' => 'ach', 'Actinidia23895' => 'ach', 'Actinidia24151' => 'ach', 'Actinidia25140' => 'ach', 'Actinidia26329' => 'ach', 'Actinidia26362' => 'ach', 'Actinidia34450' => 'ach', 'Ah.01g002680' => 'amhyb', 'Ah.02g115800' => 'amhyb', 'Ah.08g220470' => 'amhyb', 'Ah.12g058380' => 'amhyb', 'Ah.14g079080' => 'amhyb', 'AL2G20350' => 'aly', 'AL4G24410' => 'aly', 'AL4G35060' => 'aly', 'AL5G26200' => 'aly', 'AL6G31940' => 'aly', 'AL6G53060' => 'aly', 'AL8G15520' => 'aly', 'Aqoxy1G00715' => 'aox', 'Aqoxy1G00716' => 'aox', 'Aqoxy3G00606' => 'aox', 'Aqoxy4G02646' => 'aox', 'Aqoxy7G00286' => 'aox', 'arahy.Tifrunner.gnm1.ann1.400VR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DP35H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65V40T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6V30KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TXC7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0MPRU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPU33W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM0VDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GP2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSXY15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NT6TUG' => 'arhy', 'AT2G29650' => 'ath', 'AT2G38060' => 'ath', 'AT3G46980' => 'ath', 'AT4G00370' => 'ath', 'AT5G20380' => 'ath', 'AT5G44370' => 'ath', 'ATR0618G021' => 'atr', 'ATR0618G134' => 'atr', 'ATR0618G337' => 'atr', 'ATR0626G249' => 'atr', 'ATR0680G278' => 'atr', 'ATR0767G237' => 'atr', 'Atru.chr3.4066' => 'acertr', 'Atru.chr5.3557' => 'acertr', 'Atru.chr5.507' => 'acertr', 'Atru.chr7.2001' => 'acertr', 'Atru.chr7.2002' => 'acertr', 'Atru.chr8.2152' => 'acertr', 'AUR62001675' => 'cqu', 'AUR62001698' => 'cqu', 'AUR62004369' => 'cqu', 'AUR62005435' => 'cqu', 'AUR62010490' => 'cqu', 'AUR62013262' => 'cqu', 'AUR62015047' => 'cqu', 'AUR62017506' => 'cqu', 'AUR62020084' => 'cqu', 'AUR62020105' => 'cqu', 'AUR62022578' => 'cqu', 'AUR62025970' => 'cqu', 'AUR62030402' => 'cqu', 'AUR62041361' => 'cqu', 'BcaB01g02168' => 'bca', 'BcaB01g02246' => 'bca', 'BcaB01g04789' => 'bca', 'BcaB02g10273' => 'bca', 'BcaB05g22849' => 'bca', 'BcaB07g30529' => 'bca', 'BcaB08g36498' => 'bca', 'BcaC01g06883' => 'bca', 'BcaC02g11050' => 'bca', 'BcaC02g12918' => 'bca', 'BcaC02g12929' => 'bca', 'BcaC03g13761' => 'bca', 'BcaC03g16661' => 'bca', 'BcaC03g16662' => 'bca', 'BcaC04g24178' => 'bca', 'BcaC06g31622' => 'bca', 'BcaC06g34560' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01620' => 'bna', 'BolC2t07039H' => 'bol', 'BolC2t09812H' => 'bol', 'BolC2t10531H' => 'bol', 'BolC3t16196H' => 'bol', 'BolC3t19402H' => 'bol', 'BolC4t23642H' => 'bol', 'BolC4t28143H' => 'bol', 'BolC7t43244H' => 'bol', 'BolC9t52969H' => 'bol', 'BraA02t05571Z' => 'bra', 'BraA02t07876Z' => 'bra', 'BraA03t12391Z' => 'bra', 'BraA04t18386Z' => 'bra', 'BraA05t20489Z' => 'bra', 'BraA06t25135Z' => 'bra', 'BraA06t27593Z' => 'bra', 'BraA09t35708Z' => 'bra', 'C02p37950' => 'bna', 'C02p37960' => 'bna', 'C03p39250' => 'bna', 'C04p21160' => 'bna', 'C04p66380' => 'bna', 'C07p27170' => 'bna', 'C09p00340' => 'bna', 'CAN.G214.1' => 'can', 'CAN.G265.3' => 'can', 'CAN.G355.17' => 'can', 'CAN.G467.10' => 'can', 'CAN.G575.54' => 'can', 'CAN.G78.87' => 'can', 'CAN.G78.88' => 'can', 'CANSAT11G1077' => 'cansat', 'CANSAT35G0962' => 'cansat', 'CANSAT54G0163' => 'cansat', 'CANSAT56G1847' => 'cansat', 'CANSAT78G0663' => 'cansat', 'CANSAT78G1548' => 'cansat', 'CARHR122970' => 'chi', 'CARHR132640' => 'chi', 'CARHR155620' => 'chi', 'CARHR178760' => 'chi', 'CARHR192460' => 'chi', 'CARHR248490' => 'chi', 'Carub.0004s1075' => 'cru', 'Carub.0004s2003' => 'cru', 'Carub.0005s1320' => 'cru', 'Carub.0006s1877' => 'cru', 'Carub.0006s3685' => 'cru', 'Carub.0008s0410' => 'cru', 'Ca_05577_v3' => 'car', 'Ca_07927_v3' => 'car', 'Ca_14916_v3' => 'car', 'Ca_21641_v3' => 'car', 'Ca_22758_v3' => 'car', 'Ca_23617_v3' => 'car', 'Ca_23719_v3' => 'car', 'Ca_28694_v3' => 'car', 'Ca_28904_v3' => 'car', 'CBR_g19789' => 'cbr', 'CBR_g32555' => 'cbr', 'CBR_g36355' => 'cbr', 'CBR_g36356' => 'cbr', 'CBR_g49482' => 'cbr', 'Cc00_g27330' => 'ccan', 'Cc00_g32200' => 'ccan', 'Cc01_g13780' => 'ccan', 'Cc01_g14000' => 'ccan', 'Cc02_g38140' => 'ccan', 'Cc06_g01670' => 'ccan', 'Cc06_g07720' => 'ccan', 'Cc09_g04770' => 'ccan', 'CDE01G0753' => 'cde', 'CDE02G0704' => 'cde', 'CDE02G2100' => 'cde', 'CDE02G2754' => 'cde', 'CDE03G0276' => 'cde', 'CDE03G0303' => 'cde', 'CDE05G1074' => 'cde', 'CDE05G2885' => 'cde', 'CDE09G0050' => 'cde', 'CDE09G0921' => 'cde', 'Cfa002272' => 'cfa', 'Cfa003909' => 'cfa', 'Cfa005622' => 'cfa', 'Cfa011639' => 'cfa', 'Cfa017256' => 'cfa', 'Ciclev10007933m.g' => 'ccl', 'Ciclev10011514m.g' => 'ccl', 'Ciclev10024243m.g' => 'ccl', 'Ciclev10028197m.g' => 'ccl', 'Ciclev10028231m.g' => 'ccl', 'Ciclev10028471m.g' => 'ccl', 'CiPaw.01G113000' => 'cil', 'CiPaw.02G031900' => 'cil', 'CiPaw.04G177100' => 'cil', 'CiPaw.09G206000' => 'cil', 'CiPaw.13G080200' => 'cil', 'CiPaw.13G082200' => 'cil', 'CiPaw.14G060700' => 'cil', 'ClCG03G000860' => 'cla', 'ClCG03G001000' => 'cla', 'ClCG05G001480' => 'cla', 'ClCG10G009170' => 'cla', 'ClCG10G021830' => 'cla', 'ClCG11G003440' => 'cla', 'COL.COLO4_00855' => 'col', 'COL.COLO4_05863' => 'col', 'COL.COLO4_12723' => 'col', 'COL.COLO4_14597' => 'col', 'COL.COLO4_14598' => 'col', 'COL.COLO4_19093' => 'col', 'COL.COLO4_19115' => 'col', 'COL.COLO4_33376' => 'col', 'COL.COLO4_34311' => 'col', 'Cpa.g.sc11.15' => 'cpa', 'Cpa.g.sc112.47' => 'cpa', 'Cpa.g.sc112.62' => 'cpa', 'Cpa.g.sc1323.2' => 'cpa', 'Cpa.g.sc277.4' => 'cpa', 'Cpa.g.sc56.114' => 'cpa', 'Cre01.g023000' => 'cre', 'Cre03.g187050' => 'cre', 'Cre08.g379550' => 'cre', 'Cre09.g396950' => 'cre', 'Cre09.g399141' => 'cre', 'Cre12.g515750' => 'cre', 'Cre16.g648300' => 'cre', 'Cre16.g663600' => 'cre', 'Cre16.g675300' => 'cre', 'CsaV3_1G035940' => 'csa', 'CsaV3_1G036070' => 'csa', 'CsaV3_2G003310' => 'csa', 'CsaV3_3G008860' => 'csa', 'CsaV3_3G034160' => 'csa', 'CsaV3_4G009320' => 'csa', 'CSS0016022' => 'camsi', 'CSS0016747' => 'camsi', 'CSS0017514' => 'camsi', 'CSS0020471' => 'camsi', 'CSS0027182' => 'camsi', 'CSS0035241' => 'camsi', 'CSS0036468' => 'camsi', 'CSS0036501' => 'camsi', 'CSS0039951' => 'camsi', 'CSS0041452' => 'camsi', 'CSS0043887' => 'camsi', 'CSS0043896' => 'camsi', 'CSS0049656' => 'camsi', 'DCAR_005900' => 'dca', 'DCAR_015650' => 'dca', 'DCAR_018730' => 'dca', 'DCAR_020894' => 'dca', 'DCAR_025194' => 'dca', 'Dinv06066' => 'din', 'Dinv14460' => 'din', 'Dinv14470' => 'din', 'Dinv28622' => 'din', 'Dinv35514' => 'din', 'Dinv36452' => 'din', 'Dinv43824' => 'din', 'Duzib128G1126' => 'dzi', 'Duzib132G1140' => 'dzi', 'Duzib138G0031' => 'dzi', 'Duzib150G0662' => 'dzi', 'Duzib168G0038' => 'dzi', 'Duzib168G0116' => 'dzi', 'Duzib248G0460' => 'dzi', 'ECA233G3039' => 'eca', 'ECA234G0940' => 'eca', 'ECA234G1709' => 'eca', 'ECA236G2849' => 'eca', 'ECA247G2255' => 'eca', 'ECA247G3872' => 'eca', 'ECA248G1911' => 'eca', 'EL10Ac1g00403' => 'bvu', 'EL10Ac5g12594' => 'bvu', 'EL10Ac7g16115' => 'bvu', 'EL10Ac7g16134' => 'bvu', 'EL10Ac7g16139' => 'bvu', 'EL10Ac8g18764' => 'bvu', 'Eucgr.B02783' => 'egr', 'Eucgr.C00489' => 'egr', 'Eucgr.D02302' => 'egr', 'Eucgr.I01531' => 'egr', 'Eucgr.J01933' => 'egr', 'Eucgr.J01945' => 'egr', 'FAN01G0380' => 'fan', 'FAN02G0029' => 'fan', 'FAN03G1558' => 'fan', 'FAN05G1751' => 'fan', 'FAN06G0697' => 'fan', 'FAN06G4078' => 'fan', 'FAN09G2468' => 'fan', 'FAN10G0019' => 'fan', 'FAN10G2080' => 'fan', 'FAN11G0008' => 'fan', 'FAN11G2513' => 'fan', 'FAN11G3476' => 'fan', 'FAN14G1822' => 'fan', 'FAN14G2898' => 'fan', 'FAN14G3087' => 'fan', 'FAN15G0272' => 'fan', 'FAN16G0325' => 'fan', 'FAN16G0394' => 'fan', 'FAN16G0906' => 'fan', 'FAN16G1364' => 'fan', 'FAN16G3262' => 'fan', 'FAN19G1220' => 'fan', 'FAN21G2016' => 'fan', 'FAN21G3580' => 'fan', 'FAN23G0834' => 'fan', 'FAN24G1248' => 'fan', 'FAN25G0665' => 'fan', 'FAN25G1135' => 'fan', 'FAN25G2477' => 'fan', 'FAN26G1130' => 'fan', 'FAN28G1430' => 'fan', 'FvH4_1g02110' => 'fve', 'FvH4_2g16800' => 'fve', 'FvH4_3g28940' => 'fve', 'FvH4_3g37920' => 'fve', 'FvH4_3g38280' => 'fve', 'FvH4_5g39264' => 'fve', 'FvH4_6g12020' => 'fve', 'FvH4_7g14470' => 'fve', 'Glyma.02G224001' => 'gma', 'Glyma.03G008200' => 'gma', 'Glyma.07G069600' => 'gma', 'Glyma.07G144700' => 'gma', 'Glyma.07G274200' => 'gma', 'Glyma.11G175800' => 'gma', 'Glyma.13G162900' => 'gma', 'Glyma.14G190900' => 'gma', 'Glyma.17G000300' => 'gma', 'Glyma.17G108300' => 'gma', 'Glyma.18G066000' => 'gma', 'Glyma.18G233800' => 'gma', 'Glyma.20G002000' => 'gma', 'Gohir.A03G048600' => 'ghi', 'Gohir.A03G049900' => 'ghi', 'Gohir.A03G170900' => 'ghi', 'Gohir.A04G112000' => 'ghi', 'Gohir.A05G013200' => 'ghi', 'Gohir.A07G142000' => 'ghi', 'Gohir.A09G163300' => 'ghi', 'Gohir.A11G089500' => 'ghi', 'Gohir.D02G194000' => 'ghi', 'Gohir.D03G117400' => 'ghi', 'Gohir.D03G118500' => 'ghi', 'Gohir.D04G152300' => 'ghi', 'Gohir.D05G014300' => 'ghi', 'Gohir.D07G147700' => 'ghi', 'Gohir.D09G158800' => 'ghi', 'Gohir.D11G093800' => 'ghi', 'Gorai.001G168900' => 'gra', 'Gorai.003G123800' => 'gra', 'Gorai.003G124900' => 'gra', 'Gorai.005G216800' => 'gra', 'Gorai.006G180500' => 'gra', 'Gorai.007G100200' => 'gra', 'Gorai.009G014300' => 'gra', 'Gorai.012G139100' => 'gra', 'GSVIVG01012848001' => 'vvi', 'GSVIVG01012850001' => 'vvi', 'GSVIVG01024780001' => 'vvi', 'GSVIVG01024802001' => 'vvi', 'GSVIVG01026946001' => 'vvi', 'GSVIVG01034012001' => 'vvi', 'HanXRQChr02g0036221' => 'han', 'HanXRQChr06g0169971' => 'han', 'HanXRQChr08g0237231' => 'han', 'HanXRQChr10g0286981' => 'han', 'HanXRQChr12g0357151' => 'han', 'HanXRQChr12g0381751' => 'han', 'HanXRQChr15g0463971' => 'han', 'HanXRQChr15g0484911' => 'han', 'HanXRQChr16g0504111' => 'han', 'HanXRQChr17g0564061' => 'han', 'Haze_10644' => 'cav', 'Haze_15522' => 'cav', 'Haze_20949' => 'cav', 'Haze_24245' => 'cav', 'Haze_24260' => 'cav', 'Haze_25454' => 'cav', 'Hma1.2p1_0024F.1_g015990' => 'hma', 'Hma1.2p1_0343F.1_g130810' => 'hma', 'Hma1.2p1_0543F.1_g175150' => 'hma', 'Hma1.2p1_0543F.1_g175210' => 'hma', 'Hma1.2p1_0572F.1_g181050' => 'hma', 'Hma1.2p1_0763F.1_g214630' => 'hma', 'Hma1.2p1_1010F.1_g247350' => 'hma', 'Hma1.2p1_1211F.1_g267250' => 'hma', 'Hma1.2p1_3368F.1_g335620' => 'hma', 'HPP92_000326' => 'vpl', 'HPP92_014725' => 'vpl', 'HPP92_018187' => 'vpl', 'HPP92_018188' => 'vpl', 'HPP92_018189' => 'vpl', 'HPP92_021997' => 'vpl', 'HPP92_022038' => 'vpl', 'HPP92_022040' => 'vpl', 'Hund00092' => 'sun', 'Hund04883' => 'sun', 'Hund09304' => 'sun', 'Hund09306' => 'sun', 'Hund11063' => 'sun', 'Hund11064' => 'sun', 'Hund16653' => 'sun', 'Hund18863' => 'sun', 'Lalb_Chr03g0033771' => 'lal', 'Lalb_Chr03g0042971' => 'lal', 'Lalb_Chr07g0179361' => 'lal', 'Lalb_Chr10g0096871' => 'lal', 'Lalb_Chr10g0103201' => 'lal', 'Lalb_Chr15g0082761' => 'lal', 'Lalb_Chr17g0339531' => 'lal', 'Lj1A141T51' => 'lonja', 'Lj1A142T69' => 'lonja', 'Lj1g0014648' => 'lja', 'Lj2A79T38' => 'lonja', 'Lj2P954T10' => 'lonja', 'Lj3g0017204' => 'lja', 'Lj3g0020438' => 'lja', 'Lj4g0021646' => 'lja', 'Lj6g0020510' => 'lja', 'Lj7A511G74' => 'lonja', 'Lj9A408G74' => 'lonja', 'Lj9A703G35' => 'lonja', 'Lj9C584T6' => 'lonja', 'Lj9P705T23' => 'lonja', 'LjContig00155g0026380' => 'lja', 'Lsat_1_v5_gn_2_10961' => 'lsa', 'Lsat_1_v5_gn_4_30520' => 'lsa', 'Lsat_1_v5_gn_5_172240' => 'lsa', 'Lsat_1_v5_gn_5_189741' => 'lsa', 'Lsat_1_v5_gn_5_71761' => 'lsa', 'Lsat_1_v5_gn_5_93040' => 'lsa', 'Lsat_1_v5_gn_7_4840' => 'lsa', 'Lsat_1_v5_gn_9_35821' => 'lsa', 'Manes.01G255800' => 'mes', 'Manes.02G121100' => 'mes', 'Manes.02G123400' => 'mes', 'Manes.05G033500' => 'mes', 'Manes.06G044700' => 'mes', 'Manes.08G087511' => 'mes', 'Manes.09G102100' => 'mes', 'Manes.17G005900' => 'mes', 'Mapoly0037s0126' => 'mpo', 'Mapoly0045s0073' => 'mpo', 'Mapoly0065s0008' => 'mpo', 'Mapoly0135s0018' => 'mpo', 'MBI05_g36634_MAGBIO' => 'mbi', 'MBI05_g45683_MAGBIO' => 'mbi', 'MBI14_g31958_MAGBIO' => 'mbi', 'MBI14_g32929_MAGBIO' => 'mbi', 'MBI14_g32942_MAGBIO' => 'mbi', 'MBI14_g32943_MAGBIO' => 'mbi', 'MBI18_g40972_MAGBIO' => 'mbi', 'MCO02G404' => 'mco', 'MCO07G358' => 'mco', 'MCO09G593' => 'mco', 'MCO11G154' => 'mco', 'MCO16G370' => 'mco', 'MD01G1064800' => 'mdo', 'MD01G1081800' => 'mdo', 'MD02G1019100' => 'mdo', 'MD02G1019200' => 'mdo', 'MD02G1271000' => 'mdo', 'MD03G1073500' => 'mdo', 'MD03G1077600' => 'mdo', 'MD04G1146900' => 'mdo', 'MD07G1135600' => 'mdo', 'MD11G1079300' => 'mdo', 'MD11G1079500' => 'mdo', 'MD11G1082000' => 'mdo', 'MD12G1160100' => 'mdo', 'MD12G1239500' => 'mdo', 'MD15G1162900' => 'mdo', 'MD15G1254300' => 'mdo', 'Medtr2g027710' => 'mtr', 'Medtr3g463080' => 'mtr', 'Medtr4g030900' => 'mtr', 'Medtr4g116030' => 'mtr', 'Medtr5g069630' => 'mtr', 'Medtr7g066780' => 'mtr', 'Medtr7g077830' => 'mtr', 'Medtr8g030600' => 'mtr', 'MELO3C004476.2' => 'cme', 'MELO3C006105.2' => 'cme', 'MELO3C009192.2' => 'cme', 'MELO3C019026.2' => 'cme', 'MELO3C020560.2' => 'cme', 'MELO3C020576.2' => 'cme', 'Migut.A00017' => 'egut', 'Migut.B01764' => 'egut', 'Migut.D00859' => 'egut', 'Migut.E01815' => 'egut', 'Migut.J00226' => 'egut', 'Migut.K00401' => 'egut', 'Migut.L01993' => 'egut', 'Migut.N00816' => 'egut', 'Migut.O00790' => 'egut', 'MSTRG.11602' => 'ama', 'MSTRG.12671' => 'ama', 'MSTRG.19030' => 'ama', 'MSTRG.21230' => 'ama', 'MSTRG.26330' => 'ama', 'MSTRG.28226' => 'ama', 'Nitab4.5_0000008g0720' => 'nta', 'Nitab4.5_0000175g0010' => 'nta', 'Nitab4.5_0000356g0090' => 'nta', 'Nitab4.5_0000454g0010' => 'nta', 'Nitab4.5_0000583g0140' => 'nta', 'Nitab4.5_0000704g0100' => 'nta', 'Nitab4.5_0000704g0110' => 'nta', 'Nitab4.5_0001925g0010' => 'nta', 'Nitab4.5_0001925g0030' => 'nta', 'Nitab4.5_0002278g0020' => 'nta', 'Nitab4.5_0003587g0050' => 'nta', 'Nitab4.5_0006018g0110' => 'nta', 'Nitab4.5_0008253g0010' => 'nta', 'Nitab4.5_0009193g0020' => 'nta', 'Nitab4.5_0010082g0030' => 'nta', 'Nitab4.5_0013627g0010' => 'nta', 'Nitab4.5_0014810g0010' => 'nta', 'Nn1g01554' => 'nnu', 'Nn2g11362' => 'nnu', 'Nn2g11363' => 'nnu', 'Nn2g13646' => 'nnu', 'Nn4g24040' => 'nnu', 'Nn6g33395' => 'nnu', 'Nn7g37219' => 'nnu', 'Nn8g39624' => 'nnu', 'Oeu000756.1' => 'oeu', 'Oeu013936.1' => 'oeu', 'Oeu028728.1' => 'oeu', 'Oeu035010.1' => 'oeu', 'Oeu040799.1' => 'oeu', 'Oeu045514.3' => 'oeu', 'Oeu045523.2' => 'oeu', 'Oeu053519.2' => 'oeu', 'Oeu057293.1' => 'oeu', 'Oeu060251.1' => 'oeu', 'Os01g0852200' => 'osa', 'Os05g0451100' => 'osa', 'Os09g0556400' => 'osa', 'Os11g0186800' => 'osa', 'Os12g0180100' => 'osa', 'Peaxi162Scf00020g00726' => 'pax', 'Peaxi162Scf00062g00107' => 'pax', 'Peaxi162Scf00088g00819' => 'pax', 'Peaxi162Scf00141g00812' => 'pax', 'Peaxi162Scf00454g00326' => 'pax', 'Peaxi162Scf00839g00012' => 'pax', 'PGR031G2662' => 'pgr', 'PGR031G2903' => 'pgr', 'PGR102G2533' => 'pgr', 'PGR119G1710' => 'pgr', 'PGR142G1011' => 'pgr', 'PGR142G3313' => 'pgr', 'PGSC0003DMG400000047' => 'stu', 'PGSC0003DMG400020321' => 'stu', 'PGSC0003DMG400020869' => 'stu', 'PGSC0003DMG400023853' => 'stu', 'PGSC0003DMG400030684' => 'stu', 'Phvul.002G333800' => 'pvu', 'Phvul.003G171700' => 'pvu', 'Phvul.006G064900' => 'pvu', 'Phvul.008G061900' => 'pvu', 'Phvul.008G108000' => 'pvu', 'Phvul.008G263700' => 'pvu', 'Phvul.010G099800' => 'pvu', 'Potri.001G248200' => 'ptr', 'Potri.001G249800' => 'ptr', 'Potri.002G160650' => 'ptr', 'Potri.006G062300' => 'ptr', 'Potri.009G043800' => 'ptr', 'Potri.009G168200' => 'ptr', 'Potri.014G085700' => 'ptr', 'Potri.016G111000' => 'ptr', 'Potri.018G121600' => 'ptr', 'Pp3c11_22600' => 'ppa', 'Pp3c12_3180' => 'ppa', 'Pp3c12_8070' => 'ppa', 'Pp3c4_4410' => 'ppa', 'Pp3c7_2850' => 'ppa', 'Pp3s30_870' => 'ppa', 'PRCOL_00001475' => 'pco', 'PRCOL_00003300' => 'pco', 'PRCOL_00004924' => 'pco', 'PRCOL_00005661' => 'pco', 'PRCOL_00006352' => 'pco', 'Prupe.1G563500' => 'ppe', 'Prupe.2G171700' => 'ppe', 'Prupe.6G060100' => 'ppe', 'Prupe.6G062400' => 'ppe', 'Prupe.6G270700' => 'ppe', 'Prupe.7G251900' => 'ppe', 'Prupe.8G180300' => 'ppe', 'Psat1g048440' => 'psa', 'Psat2g059800' => 'psa', 'Psat2g061680' => 'psa', 'Psat2g061720' => 'psa', 'Psat3g108040' => 'psa', 'Psat3g115800' => 'psa', 'Psat3g131520' => 'psa', 'Psat4g035120' => 'psa', 'Psat4g202920' => 'psa', 'Psat5g162880' => 'psa', 'Psat5g303320' => 'psa', 'Psat7g227960' => 'psa', 'PSO017G0326' => 'pso', 'PSO063G1122' => 'pso', 'PSO170G6862' => 'pso', 'PSO339G2287' => 'pso', 'PSO339G4093' => 'pso', 'PSO339G6188' => 'pso', 'PSO384G0834' => 'pso', 'PSO384G2018' => 'pso', 'PSO478G0691' => 'pso', 'PSO782G0947' => 'pso', 'PSO782G2556' => 'pso', 'QL01p027198' => 'qlo', 'QL01p027237' => 'qlo', 'QL01p037459' => 'qlo', 'QL02p090592' => 'qlo', 'QL05p058753' => 'qlo', 'QL08p048240' => 'qlo', 'QL11p020039' => 'qlo', 'QL11p056440' => 'qlo', 'QL11p056446' => 'qlo', 'RcHm_v2.0_Chr1g0342871' => 'rch', 'RcHm_v2.0_Chr1g0342891' => 'rch', 'RcHm_v2.0_Chr1g0355881' => 'rch', 'RcHm_v2.0_Chr2g0087161' => 'rch', 'RcHm_v2.0_Chr3g0463851' => 'rch', 'RcHm_v2.0_Chr5g0035751' => 'rch', 'RcHm_v2.0_Chr5g0051801' => 'rch', 'RcHm_v2.0_Chr5g0068341' => 'rch', 'RcHm_v2.0_Chr5g0068811' => 'rch', 'RcHm_v2.0_Chr6g0280921' => 'rch', 'Rhsim01G0235600' => 'rsi', 'Rhsim03G0252700' => 'rsi', 'Rhsim04G0166000' => 'rsi', 'Rhsim05G0047000' => 'rsi', 'Rhsim07G0014000' => 'rsi', 'Rhsim13G0073600' => 'rsi', 'Rhsim13G0101000' => 'rsi', 'Sabra06G0044900' => 'sbr', 'Sabra09G0031200' => 'sbr', 'Sabra14G0062000' => 'sbr', 'Sabra16G0107500' => 'sbr', 'Sabra16G0151800' => 'sbr', 'Sabra18G0102000' => 'sbr', 'SalBow1G2698' => 'sbo', 'SalBow2G0651' => 'sbo', 'SalBow3G0347' => 'sbo', 'SalBow5G1365' => 'sbo', 'SalBow5G2686' => 'sbo', 'SalBow5G2814' => 'sbo', 'SalBow5G4258' => 'sbo', 'SalBow5G5438' => 'sbo', 'SalBow6G1210' => 'sbo', 'Sc01g0006760' => 'sci', 'Sc06g0006220' => 'sci', 'Sc06g0006340' => 'sci', 'Sc08g0002180' => 'sci', 'Sc08g0006070' => 'sci', 'Sc12g0000980' => 'sci', 'Sc23g0002830' => 'sci', 'Sed0006811' => 'sed', 'Sed0014694' => 'sed', 'Sed0015359' => 'sed', 'Sed0016687' => 'sed', 'Sed0021584' => 'sed', 'Sed0024342' => 'sed', 'Sed0026363' => 'sed', 'Sed0027250' => 'sed', 'SEGI_00743' => 'sgi', 'SEGI_05014' => 'sgi', 'SEGI_06216' => 'sgi', 'SEGI_14112' => 'sgi', 'SEGI_17923' => 'sgi', 'SEGI_20766' => 'sgi', 'SGA_v2.0_scaffold120G32922' => 'sas', 'SGA_v2.0_scaffold13G06451' => 'sas', 'SGA_v2.0_scaffold183G39903' => 'sas', 'SGA_v2.0_scaffold4G02304' => 'sas', 'SGA_v2.0_scaffold75G24997' => 'sas', 'SGA_v2.0_scaffold85G26764' => 'sas', 'SMO118G0038' => 'smo', 'SMO164G0200' => 'smo', 'SMO367G0566' => 'smo', 'Solyc01g094720.3' => 'sly', 'Solyc07g007560.3' => 'sly', 'Solyc09g013150.4' => 'sly', 'Solyc09g031700.4' => 'sly', 'Solyc09g031750.4' => 'sly', 'Solyc12g100130.1' => 'sly', 'Sopen01g038520' => 'spe', 'Sopen07g003560' => 'spe', 'Sopen09g007010' => 'spe', 'Sopen09g014650' => 'spe', 'Sopen09g014690' => 'spe', 'Sopen12g034760' => 'spe', 'Sp2g09210' => 'spa', 'Sp4g12370' => 'spa', 'Sp4g20380' => 'spa', 'Sp5g14740' => 'spa', 'Sp6g00450' => 'spa', 'Sp6g24040' => 'spa', 'TAR369G0932' => 'tar', 'TAR369G1082' => 'tar', 'TAR623G0929' => 'tar', 'TAR623G1011' => 'tar', 'TAR623G1402' => 'tar', 'TAR625G1481' => 'tar', 'TAR629G0774' => 'tar', 'TAR633G1025' => 'tar', 'TAR633G1827' => 'tar', 'TAR633G1916' => 'tar', 'THA.LOC104806247' => 'tha', 'THA.LOC104810733' => 'tha', 'THA.LOC104812934' => 'tha', 'THA.LOC104815095' => 'tha', 'THA.LOC104817026' => 'tha', 'THA.LOC104824522' => 'tha', 'THA.LOC104825843' => 'tha', 'THA.LOC104826294' => 'tha', 'Thecc.01G358000' => 'tca', 'Thecc.02G146200' => 'tca', 'Thecc.05G022300' => 'tca', 'Thecc.09G136600' => 'tca', 'Thecc.09G304700' => 'tca', 'Thecc.09G306900' => 'tca', 'Thhalv10003416m.g' => 'esa', 'Thhalv10010272m.g' => 'esa', 'Thhalv10013250m.g' => 'esa', 'Thhalv10016491m.g' => 'esa', 'Thhalv10017818m.g' => 'esa', 'Thhalv10028551m.g' => 'esa', 'TPR.G13286' => 'tpr', 'TPR.G13433' => 'tpr', 'TPR.G15302' => 'tpr', 'TPR.G1541' => 'tpr', 'TPR.G16548' => 'tpr', 'TPR.G20853' => 'tpr', 'TPR.G21915' => 'tpr', 'TPR.G24047' => 'tpr', 'TPR.G26342' => 'tpr', 'TPR.G34131' => 'tpr', 'TPR.G37755' => 'tpr', 'TPR.G39256' => 'tpr', 'TPR.G7977' => 'tpr', 'TWI14G0882' => 'twi', 'TWI34G0845' => 'twi', 'TWI75G0152' => 'twi', 'TWI75G1805' => 'twi', 'TWI77G0083' => 'twi', 'TWI79G0407' => 'twi', 'unitig_0.g442' => 'ugi', 'unitig_0.g443' => 'ugi', 'unitig_32.g10880' => 'ugi', 'unitig_8.g4986' => 'ugi', 'unitig_899.g15011' => 'ugi', 'unitig_899.g15012' => 'ugi', 'vmacro02995' => 'vma', 'vmacro06165' => 'vma', 'vmacro08603' => 'vma', 'vmacro13269' => 'vma', 'vmacro14585' => 'vma', 'vmacro17305' => 'vma', 'vmacro22984' => 'vma', 'vmacro23338' => 'vma', 'VMungo0331G1984' => 'vmu', 'VMungo0464G0806' => 'vmu', 'VMungo0540G2032' => 'vmu', 'VMungo0647G1129' => 'vmu', 'VMungo0647G1597' => 'vmu', 'VMungo1215G3343' => 'vmu', 'VMungo1383G2691' => 'vmu', 'VMungo1383G3602' => 'vmu', 'Zm00001eb051610' => 'zma', 'Zm00001eb147760' => 'zma', 'Zm00001eb162400' => 'zma', 'Zm00001eb219200' => 'zma', 'Zm00001eb288710' => 'zma', 'Zm00001eb320540' => 'zma', 'Zm00001eb332610' => 'zma', 'Zm00001eb348140' => 'zma', 'Zm00001eb356550' => 'zma' ) $gf_id = 'HOM05D000731' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000731' ) $data_identifier = 'HOM05D000731' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 9, 'csa' => (int) 6, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 31, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 5, 'mdo' => (int) 16, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb356550' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1